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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1960 1
1966 1
1972 1
1974 1
1975 2
1976 4
1977 2
1978 1
1979 3
1980 9
1981 6
1982 16
1983 37
1984 63
1985 114
1986 128
1987 145
1988 176
1989 262
1990 283
1991 283
1992 297
1993 352
1994 392
1995 483
1996 491
1997 590
1998 502
1999 575
2000 667
2001 761
2002 890
2003 1104
2004 1454
2005 1880
2006 1906
2007 2032
2008 1997
2009 2042
2010 2152
2011 2395
2012 2695
2013 2800
2014 2973
2015 3130
2016 3146
2017 3310
2018 3565
2019 3880
2020 4362
2021 4944
2022 5223
2023 4986
2024 2002

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64,827 results

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Page 1
Integration of software tools for integrative modeling of biomolecular systems.
Hancock M, Peulen TO, Webb B, Poon B, Fraser JS, Adams P, Sali A. Hancock M, et al. J Struct Biol. 2022 Mar;214(1):107841. doi: 10.1016/j.jsb.2022.107841. Epub 2022 Feb 9. J Struct Biol. 2022. PMID: 35149213 Free PMC article.
Often, a type of input information will be best handled by a specific modeling software package. In such a case, we desire to integrate our integrative modeling software package, Integrative Modeling Platform (IMP), with software specialized to the computatio …
Often, a type of input information will be best handled by a specific modeling software package. In such a case, we desire to integra …
The PANDORA Software for Anchor-Restrained Peptide:MHC Modeling.
Marzella DF, Crocioni G, Parizi FM, Xue LC. Marzella DF, et al. Methods Mol Biol. 2023;2673:251-271. doi: 10.1007/978-1-0716-3239-0_18. Methods Mol Biol. 2023. PMID: 37258920
For this reason, softwares like PANDORA have been developed to rapidly and accurately generate peptide:MHC (pMHC) 3D structures. In this chapter, we describe the protocol of PANDORA. PANDORA exploits the structural knowledge on anchor pockets that MHC molecul …
For this reason, softwares like PANDORA have been developed to rapidly and accurately generate peptide:MHC (pMHC) 3D structures …
Modeling of Protein Complexes.
Scietti L, Forneris F. Scietti L, et al. Methods Mol Biol. 2023;2627:349-371. doi: 10.1007/978-1-0716-2974-1_20. Methods Mol Biol. 2023. PMID: 36959458
The recent advances in structural biology, combined with continuously increasing computational capabilities and development of advanced softwares, have drastically simplified the workflow for protein homology modeling. Modeling of individual proteins is nowadays qui …
The recent advances in structural biology, combined with continuously increasing computational capabilities and development of advanc …
Software standards and the laboratory information system.
Aller RD. Aller RD. Am J Clin Pathol. 1996 Apr;105(4 Suppl 1):S48-53. Am J Clin Pathol. 1996. PMID: 8607462 Review.
Software standards simplify communication and cooperation between applications provided by different software vendors. ...Nomenclatures, particularly the Systematized Nomenclature of Medicine (SNOMED), have facilitated the structuring of medical information, …
Software standards simplify communication and cooperation between applications provided by different software vendors. ...Nome …
Visualizing protein structures - tools and trends.
Martinez X, Chavent M, Baaden M. Martinez X, et al. Biochem Soc Trans. 2020 Apr 29;48(2):499-506. doi: 10.1042/BST20190621. Biochem Soc Trans. 2020. PMID: 32196545 Review.
It provides an essential support for presenting results, reasoning on and formulating hypotheses related to molecular structure. Tools for visual exploration of structural data have become easily accessible on a broad variety of platforms thanks to advanced softw …
It provides an essential support for presenting results, reasoning on and formulating hypotheses related to molecular structure. Tool …
BioSANS: A software package for symbolic and numeric biological simulation.
Fajiculay E, Hsu CP. Fajiculay E, et al. PLoS One. 2022 Apr 18;17(4):e0256409. doi: 10.1371/journal.pone.0256409. eCollection 2022. PLoS One. 2022. PMID: 35436294 Free PMC article.
Softwares exist for systems biology modeling, but most support only certain types of modeling tasks. ...The software can be used by graphical user interface, command line, or as a python import. ...
Softwares exist for systems biology modeling, but most support only certain types of modeling tasks. ...The software can be us …
SSDraw: Software for generating comparative protein secondary structure diagrams.
Chen EA, Porter LL. Chen EA, et al. Protein Sci. 2023 Dec;32(12):e4836. doi: 10.1002/pro.4836. Protein Sci. 2023. PMID: 37953705 Free PMC article.
The program SSDraw generates publication-quality protein secondary structure diagrams from three-dimensional protein structures. To depict relationships between secondary structure and other protein features, diagrams can be colored by conservation score, B-f …
The program SSDraw generates publication-quality protein secondary structure diagrams from three-dimensional protein structures …
atomium-a Python structure parser.
Ireland SM, Martin ACR. Ireland SM, et al. Bioinformatics. 2020 May 1;36(9):2750-2754. doi: 10.1093/bioinformatics/btaa072. Bioinformatics. 2020. PMID: 32044951 Free PMC article.
SUMMARY: Structural biology relies on specific file formats to convey information about macromolecular structures. ...
SUMMARY: Structural biology relies on specific file formats to convey information about macromolecular structures. ...
Meta-structure-based graph attention networks.
Li J, Sun Q, Zhang F, Yang B. Li J, et al. Neural Netw. 2024 Mar;171:362-373. doi: 10.1016/j.neunet.2023.12.025. Epub 2023 Dec 14. Neural Netw. 2024. PMID: 38134599
The graph structure filterer filters out graph structures that are more effective for downstream classification tasks based on diversity. The graph structure parser assigns different weights to graph structures consisting of different meta-structure …
The graph structure filterer filters out graph structures that are more effective for downstream classification tasks based on …
Accuracy of ITK-SNAP software for 3D analysis of a non-regular topography structure.
Gomes AF, Brasil DM, Silva AIV, Freitas DQ, Haiter-Neto F, Groppo FC. Gomes AF, et al. Oral Radiol. 2020 Apr;36(2):183-189. doi: 10.1007/s11282-019-00397-y. Epub 2019 Jul 2. Oral Radiol. 2020. PMID: 31267257
OBJECTIVES: To evaluate the accuracy of ITK-SNAP software for measuring volumes of a non-regular shape structure, using cone beam computed tomography (CBCT) scans, besides for developing a mathematical model to correct the software measurement error in case i …
OBJECTIVES: To evaluate the accuracy of ITK-SNAP software for measuring volumes of a non-regular shape structure, using cone b …
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